CellCycle-1997Nov

File Name : CellCycle-1997Nov.eml

• Summary

  Stepper List (1)

  • DE

  System List (2)

  • /
  • /cell

  Variable List (16)

  • /cell:Cdc25
  • /cell:Dimensions
  • /cell:EmptySet
  • /cell:G1K
  • /cell:G1R
  • /cell:G2K
  • /cell:G2R
  • /cell:IE
  • /cell:PG2
  • /cell:PG2R
  • /cell:R
  • /cell:SIZE
  • /cell:UbE
  • /cell:UbE2
  • /cell:Wee1
  • /cell:mass

  Process List (33)

  • /:Reaction1
  • /:Reaction10
  • /:Reaction11
  • /:Reaction12
  • /:Reaction13
  • /:Reaction14
  • /:Reaction15
  • /:Reaction16
  • /:Reaction17
  • /:Reaction18
  • /:Reaction19
  • /:Reaction2
  • /:Reaction20
  • /:Reaction21
  • /:Reaction22
  • /:Reaction23
  • /:Reaction24
  • /:Reaction25
  • /:Reaction26
  • /:Reaction27
  • /:Reaction28
  • /:Reaction29
  • /:Reaction3
  • /:Reaction30
  • /:Reaction31
  • /:Reaction32
  • /:Reaction33
  • /:Reaction4
  • /:Reaction5
  • /:Reaction6
  • /:Reaction7
  • /:Reaction8
  • /:Reaction9
  
  
  

• Stepper

  
  

  Stepper Class/ID	Properties
  ODE45Stepper DE	# No Property	-----

  
  
  

• Detail Information

  System:/

  System Information
  StepperID	DE
  Name	Root System
  Variable List
  ID	Name		Value
  # No Property
  Process List
  Process Class/ID	Properties
  ExpressionFluxProcess Reaction1
  	ID	Reaction1
  	mu	0.00495
  	Expression	( mu P0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:mass	1
  ExpressionFluxProcess Reaction2
  	ID	Reaction2
  	k1	0.015
  	Expression	( k1 ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:G2K	1
  ExpressionFluxProcess Reaction3
  	ID	Reaction3
  	V2	0.25
  	V2p	0.0075
  	Expression	( S0.MolarConc (V2p (1 - C0.MolarConc) + V2 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2K	-1
  		P0	Variable:/cell:EmptySet	0
  		C0	Variable:/cell:UbE	0
  ExpressionFluxProcess Reaction4
  	ID	Reaction4
  	k3	0.09375
  	Expression	( k3 ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:R	1
  ExpressionFluxProcess Reaction5
  	ID	Reaction5
  	k4	0.1875
  	Expression	( k4 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:R	-1
  		P0	Variable:/cell:EmptySet	0
  ExpressionFluxProcess Reaction6
  	ID	Reaction6
  	Vw	0.35
  	Vwp	0.035
  	Expression	( S0.MolarConc (Vwp (1 - C0.MolarConc) + Vw C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2K	-1
  		P0	Variable:/cell:PG2	1
  		C0	Variable:/cell:Wee1	0
  ExpressionFluxProcess Reaction7
  	ID	Reaction7
  	V25	0.5
  	V25p	0.025
  	Expression	( S0.MolarConc (V25p (1 - C0.MolarConc) + V25 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2	-1
  		P0	Variable:/cell:G2K	1
  		C0	Variable:/cell:Cdc25	0
  ExpressionFluxProcess Reaction8
  	ID	Reaction8
  	k7	100.0
  	Expression	( S0.MolarConc k7 S1.MolarConc ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2K	-1
  		S1	Variable:/cell:R	-1
  		P0	Variable:/cell:G2R	1
  ExpressionFluxProcess Reaction9
  	ID	Reaction9
  	k7r	0.1
  	Expression	( S0.MolarConc k7r ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2R	-1
  		P0	Variable:/cell:G2K	1
  		P1	Variable:/cell:R	1
  ExpressionFluxProcess Reaction10
  	ID	Reaction10
  	k7	100.0
  	Expression	( k7 S0.MolarConc S1.MolarConc ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2	-1
  		S1	Variable:/cell:R	-1
  		P0	Variable:/cell:PG2R	1
  ExpressionFluxProcess Reaction11
  	ID	Reaction11
  	k7r	0.1
  	Expression	( k7r S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2R	-1
  		P0	Variable:/cell:PG2	1
  		P1	Variable:/cell:R	1
  ExpressionFluxProcess Reaction12
  	ID	Reaction12
  	Cig1	0.0
  	k0001	0.0
  	Kmp	0.001
  	kp	3.25
  	alpha	0.25
  	beta	0.05
  	Expression	( S0.MolarConc (k0001 + kp C0.MolarConc (Cig1 + alpha C1.MolarConc + C2.MolarConc + beta C3.MolarConc)) / (Kmp + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:R	-1
  		P0	Variable:/cell:EmptySet	0
  		C0	Variable:/cell:mass	0
  		C1	Variable:/cell:G1K	0
  		C2	Variable:/cell:G2K	0
  		C3	Variable:/cell:PG2	0
  ExpressionFluxProcess Reaction13
  	ID	Reaction13
  	k4	0.1875
  	Expression	( S0.MolarConc k4 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2R	-1
  		P0	Variable:/cell:G2K	1
  ExpressionFluxProcess Reaction14
  	ID	Reaction14
  	V2	0.25
  	V2p	0.0075
  	Expression	( S0.MolarConc (V2p (1 - C0.MolarConc) + V2 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2	-1
  		P0	Variable:/cell:EmptySet	0
  		C0	Variable:/cell:UbE	0
  ExpressionFluxProcess Reaction15
  	ID	Reaction15
  	k2p	0.05
  	V2	0.25
  	V2p	0.0075
  	Expression	( S0.MolarConc (k2p + V2p (1 - C0.MolarConc) + V2 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G2R	-1
  		P0	Variable:/cell:R	1
  		C0	Variable:/cell:UbE	0
  ExpressionFluxProcess Reaction16
  	ID	Reaction16
  	k2p	0.05
  	V2	0.25
  	V2p	0.0075
  	Expression	( S0.MolarConc (k2p + V2p (1 - C0.MolarConc) + V2 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2R	-1
  		P0	Variable:/cell:R	1
  		C0	Variable:/cell:UbE	0
  ExpressionFluxProcess Reaction17
  	ID	Reaction17
  	k4	0.1875
  	Expression	( k4 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:PG2R	-1
  		P0	Variable:/cell:PG2	1
  ExpressionFluxProcess Reaction18
  	ID	Reaction18
  	k4	0.1875
  	Expression	( S0.MolarConc k4 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G1R	-1
  		P0	Variable:/cell:G1K	1
  ExpressionFluxProcess Reaction19
  	ID	Reaction19
  	k5	0.00175
  	Expression	( k5 ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:G1K	1
  ExpressionFluxProcess Reaction20
  	ID	Reaction20
  	V6	7.5
  	V6p	0.0375
  	Expression	( S0.MolarConc (V6p (1 - C0.MolarConc) + V6 C0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G1K	-1
  		P0	Variable:/cell:EmptySet	0
  		C0	Variable:/cell:UbE2	0
  ExpressionFluxProcess Reaction21
  	ID	Reaction21
  	k8	10.0
  	Expression	( S0.MolarConc k8 S1.MolarConc ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G1K	-1
  		S1	Variable:/cell:R	-1
  		P0	Variable:/cell:G1R	1
  ExpressionFluxProcess Reaction22
  	ID	Reaction22
  	k8r	0.1
  	Expression	( S0.MolarConc k8r ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G1R	-1
  		P0	Variable:/cell:G1K	1
  		P1	Variable:/cell:R	1
  ExpressionFluxProcess Reaction23
  	ID	Reaction23
  	k6p	0.0
  	Expression	( S0.MolarConc k6p ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:G1R	-1
  		P0	Variable:/cell:R	1
  ExpressionFluxProcess Reaction24
  	ID	Reaction24
  	k0002	0.0
  	Kmu	0.01
  	ku	0.2
  	Expression	( (k0002 + C0.MolarConc ku) (1 - P0.MolarConc) / (1 + Kmu - P0.MolarConc) ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:UbE	1
  		C0	Variable:/cell:IE	0
  ExpressionFluxProcess Reaction25
  	ID	Reaction25
  	kc	1.0
  	Kmc	0.1
  	beta	0.05
  	Expression	( (1 - P0.MolarConc) kc (C0.MolarConc + beta C1.MolarConc) / (1 - P0.MolarConc + Kmc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:Cdc25	1
  		C0	Variable:/cell:G2K	0
  		C1	Variable:/cell:PG2	0
  ExpressionFluxProcess Reaction26
  	ID	Reaction26
  	ki	0.4
  	Kmi	0.01
  	beta	0.05
  	Expression	( (1 - P0.MolarConc) ki (C0.MolarConc + beta C1.MolarConc) / (1 - P0.MolarConc + Kmi) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:IE	1
  		C0	Variable:/cell:G2K	0
  		C1	Variable:/cell:PG2	0
  ExpressionFluxProcess Reaction27
  	ID	Reaction27
  	Kmu2	0.05
  	ku2	1.0
  	beta	0.05
  	Expression	( ku2 (1 - P0.MolarConc) (C0.MolarConc + beta C1.MolarConc) / (1 + Kmu2 - P0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:UbE2	1
  		C0	Variable:/cell:G2K	0
  		C1	Variable:/cell:PG2	0
  ExpressionFluxProcess Reaction28
  	ID	Reaction28
  	Kmwr	0.1
  	kwr	0.25
  	Expression	( kwr (1 - P0.MolarConc) / (1 + Kmwr - P0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:EmptySet	0
  		P0	Variable:/cell:Wee1	1
  ExpressionFluxProcess Reaction29
  	ID	Reaction29
  	kir	0.1
  	Kmir	0.01
  	Expression	( S0.MolarConc kir / (S0.MolarConc + Kmir) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:IE	-1
  		P0	Variable:/cell:EmptySet	0
  ExpressionFluxProcess Reaction30
  	ID	Reaction30
  	Kmur	0.01
  	kur	0.1
  	Expression	( kur S0.MolarConc / (Kmur + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:UbE	-1
  		P0	Variable:/cell:EmptySet	0
  ExpressionFluxProcess Reaction31
  	ID	Reaction31
  	Kmur2	0.05
  	kur2	0.3
  	Expression	( kur2 S0.MolarConc / (Kmur2 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:UbE2	-1
  		P0	Variable:/cell:EmptySet	0
  ExpressionFluxProcess Reaction32
  	ID	Reaction32
  	Kmw	0.1
  	kw	1.0
  	beta	0.05
  	Expression	( kw S0.MolarConc (C0.MolarConc + beta C1.MolarConc) / (Kmw + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:Wee1	-1
  		P0	Variable:/cell:EmptySet	0
  		C0	Variable:/cell:G2K	0
  		C1	Variable:/cell:PG2	0
  ExpressionFluxProcess Reaction33
  	ID	Reaction33
  	kcr	0.25
  	Kmcr	0.1
  	Expression	( S0.MolarConc kcr / (S0.MolarConc + Kmcr) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cell:Cdc25	-1
  		P0	Variable:/cell:EmptySet	0

  
  
  

  System:/cell

  System Information
  StepperID	DE
  Variable List
  ID	Name		Value
  Dimensions	-----		3
  SIZE	-----		1.0
  EmptySet	-----		0.0
  Cdc25	-----		0.0
  G1K	-----		0.0
  G1R	-----		0.0
  G2K	-----		0.0
  G2R	-----		0.0
  IE	-----		0.0
  mass	-----		2.40885468e+23
  PG2	-----		0.0
  PG2R	-----		0.0
  R	-----		0.0
  UbE	-----		0.0
  UbE2	-----		0.0
  Wee1	-----		0.0
  Process List
  Process Class/ID	Properties
  # No Property