CellCycle-1998Gar

File Name : CellCycle-1998Gar.eml

• Summary

  Stepper List (1)

  • DE

  System List (2)

  • /
  • /cytoplasm

  Variable List (8)

  • /cytoplasm:C
  • /cytoplasm:Dimensions
  • /cytoplasm:EmptySet
  • /cytoplasm:M
  • /cytoplasm:SIZE
  • /cytoplasm:X
  • /cytoplasm:Y
  • /cytoplasm:Z

  Process List (13)

  • /:Reaction1
  • /:Reaction10
  • /:Reaction11
  • /:Reaction12
  • /:Reaction13
  • /:Reaction2
  • /:Reaction3
  • /:Reaction4
  • /:Reaction5
  • /:Reaction6
  • /:Reaction7
  • /:Reaction8
  • /:Reaction9
  
  
  

• Stepper

  
  

  Stepper Class/ID	Properties
  ODE45Stepper DE	# No Property	-----

  
  
  

• Detail Information

  System:/

  System Information
  StepperID	DE
  Name	Root System
  Variable List
  ID	Name		Value
  # No Property
  Process List
  Process Class/ID	Properties
  ExpressionFluxProcess Reaction1
  	ID	Reaction1
  	vi	0.025
  	Expression	( vi ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:EmptySet	0
  		P0	Variable:/cytoplasm:C	1
  ExpressionFluxProcess Reaction2
  	ID	Reaction2
  	kd	0.01
  	Expression	( S0.MolarConc kd ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:C	-1
  		P0	Variable:/cytoplasm:EmptySet	0
  ExpressionFluxProcess Reaction3
  	ID	Reaction3
  	kd	0.01
  	vd	0.25
  	Expression	( S0.MolarConc vd C0.MolarConc / (S0.MolarConc + kd) ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:C	-1
  		P0	Variable:/cytoplasm:EmptySet	0
  		C0	Variable:/cytoplasm:X	0
  ExpressionFluxProcess Reaction4
  	ID	Reaction4
  	VS	0.0
  	Expression	( VS ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:EmptySet	0
  		P0	Variable:/cytoplasm:Y	1
  ExpressionFluxProcess Reaction5
  	ID	Reaction5
  	d1	0.05
  	Expression	( d1 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:Y	-1
  		P0	Variable:/cytoplasm:EmptySet	0
  ExpressionFluxProcess Reaction6
  	ID	Reaction6
  	a1	0.5
  	Expression	( a1 S0.MolarConc S1.MolarConc ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:C	-1
  		S1	Variable:/cytoplasm:Y	-1
  		P0	Variable:/cytoplasm:Z	1
  ExpressionFluxProcess Reaction7
  	ID	Reaction7
  	a2	0.5
  	Expression	( a2 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:Z	-1
  		P0	Variable:/cytoplasm:C	1
  		P1	Variable:/cytoplasm:Y	1
  ExpressionFluxProcess Reaction8
  	ID	Reaction8
  	alpha	0.1
  	Expression	( S0.MolarConc alpha ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:Z	-1
  		P0	Variable:/cytoplasm:Y	1
  ExpressionFluxProcess Reaction9
  	ID	Reaction9
  	alpha	0.1
  	Expression	( S0.MolarConc alpha ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:Z	-1
  		P0	Variable:/cytoplasm:C	1
  ExpressionFluxProcess Reaction10
  	ID	Reaction10
  	K1	0.005
  	Kc	0.3
  	VM1	3.0
  	Expression	( (1 - P0.MolarConc) VM1 C0.MolarConc / 1 + K1 - P0.MolarConc) <em> (Kc + C0.MolarConc[+] ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:EmptySet	0
  		P0	Variable:/cytoplasm:M	1
  		C0	Variable:/cytoplasm:C	0
  ExpressionFluxProcess Reaction11
  	ID	Reaction11
  	K3	0.005
  	VM3	1.0
  	Expression	( VM3 (1 - P0.MolarConc) C0.MolarConc / (1 + K3 - P0.MolarConc) ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:EmptySet	0
  		P0	Variable:/cytoplasm:X	1
  		C0	Variable:/cytoplasm:M	0
  ExpressionFluxProcess Reaction12
  	ID	Reaction12
  	K2	0.005
  	V2	1.5
  	Expression	( S0.MolarConc V2 / (K2 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:M	-1
  		P0	Variable:/cytoplasm:EmptySet	0
  ExpressionFluxProcess Reaction13
  	ID	Reaction13
  	K4	0.005
  	V4	0.5
  	Expression	( V4 S0.MolarConc / (K4 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/cytoplasm:X	-1
  		P0	Variable:/cytoplasm:EmptySet	0

  
  
  

  System:/cytoplasm

  System Information
  StepperID	DE
  Variable List
  ID	Name		Value
  Dimensions	-----		3
  SIZE	-----		1.0
  EmptySet	-----		0.0
  C	-----		0.0
  M	-----		0.0
  X	-----		0.0
  Y	-----		6.0221367e+23
  Z	-----		6.0221367e+23
  Process List
  Process Class/ID	Properties
  # No Property