CircClock-2001Ued

File Name : CircClock-2001Ued.eml

• Summary

  Stepper List (1)

  • DE

  System List (2)

  • /
  • /Drosophilia

  Variable List (13)

  • /Drosophilia:CCc
  • /Drosophilia:CCn
  • /Drosophilia:Clkc
  • /Drosophilia:Clkm
  • /Drosophilia:Dimensions
  • /Drosophilia:EmptySet
  • /Drosophilia:PTc
  • /Drosophilia:PTn
  • /Drosophilia:Perc
  • /Drosophilia:Perm
  • /Drosophilia:SIZE
  • /Drosophilia:Timc
  • /Drosophilia:Timm

  Process List (37)

  • /:Reaction1
  • /:Reaction10
  • /:Reaction11
  • /:Reaction12
  • /:Reaction13
  • /:Reaction14
  • /:Reaction15
  • /:Reaction16
  • /:Reaction17
  • /:Reaction18
  • /:Reaction19
  • /:Reaction2
  • /:Reaction20
  • /:Reaction21
  • /:Reaction22
  • /:Reaction23
  • /:Reaction24
  • /:Reaction25
  • /:Reaction26
  • /:Reaction27
  • /:Reaction28
  • /:Reaction29
  • /:Reaction3
  • /:Reaction30
  • /:Reaction31
  • /:Reaction32
  • /:Reaction33
  • /:Reaction34
  • /:Reaction35
  • /:Reaction36
  • /:Reaction37
  • /:Reaction4
  • /:Reaction5
  • /:Reaction6
  • /:Reaction7
  • /:Reaction8
  • /:Reaction9
  
  
  

• Stepper

  
  

  Stepper Class/ID	Properties
  ODE45Stepper DE	# No Property	-----

  
  
  

• Detail Information

  System:/

  System Information
  StepperID	DE
  Name	Root System
  Variable List
  ID	Name		Value
  # No Property
  Process List
  Process Class/ID	Properties
  ExpressionFluxProcess Reaction1
  	ID	Reaction1
  	a	1.0
  	A1	0.45
  	B1	0.0
  	c1	0.0
  	r1	1.02
  	s1	1.45
  	Expression	( c1 + (B1 + (C0.MolarConc / A1)^a) s1 / (1 + B1 + (C0.MolarConc / A1)^a + (C1.MolarConc / r1)^r1) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:Perm	1
  		C0	Variable:/Drosophilia:CCn	0
  		C1	Variable:/Drosophilia:PTn	0
  ExpressionFluxProcess Reaction2
  	ID	Reaction2
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Perm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction3
  	ID	Reaction3
  	a	1.0
  	A2	0.45
  	B2	0.0
  	c2	0.0
  	r2	1.02
  	s3	1.45
  	Expression	( c2 + (B2 + (C0.MolarConc / A2)^a) s3 / (1 + B2 + (C0.MolarConc / A2)^a + (C1.MolarConc / r2)^r2) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:Timm	1
  		C0	Variable:/Drosophilia:CCn	0
  		C1	Variable:/Drosophilia:PTn	0
  ExpressionFluxProcess Reaction4
  	ID	Reaction4
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Timm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction5
  	ID	Reaction5
  	a	1.0
  	A3	0.8
  	B3	0.6
  	c3	0.0
  	r3	0.89
  	s5	1.63
  	Expression	( c3 + (B3 + (C0.MolarConc / A3)^a) s5 / (1 + B3 + (C0.MolarConc / A3)^a + (C1.MolarConc / r3)^r3) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:Clkm	1
  		C0	Variable:/Drosophilia:PTn	0
  		C1	Variable:/Drosophilia:CCn	0
  ExpressionFluxProcess Reaction6
  	ID	Reaction6
  	D0	0.012
  	Expression	( S0.MolarConc D0 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Clkm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction7
  	ID	Reaction7
  	k3	2.0
  	T3	1.63
  	Expression	( S0.MolarConc T3 / (k3 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCc	-1
  		P0	Variable:/Drosophilia:CCn	1
  ExpressionFluxProcess Reaction8
  	ID	Reaction8
  	k4	2.0
  	T4	0.52
  	Expression	( S0.MolarConc T4 / (k4 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCn	-1
  		P0	Variable:/Drosophilia:CCc	1
  ExpressionFluxProcess Reaction9
  	ID	Reaction9
  	k2	2.0
  	T2	0.72
  	Expression	( S0.MolarConc T2 / (k2 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTn	-1
  		P0	Variable:/Drosophilia:PTc	1
  ExpressionFluxProcess Reaction10
  	ID	Reaction10
  	k1	2.0
  	T1	1.73
  	Expression	( S0.MolarConc T1 / (k1 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:PTn	1
  ExpressionFluxProcess Reaction11
  	ID	Reaction11
  	Cycc	1.0
  	v3	1.63
  	Expression	( S0.MolarConc Cycc v3 ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Clkc	-1
  		P0	Variable:/Drosophilia:CCc	1
  ExpressionFluxProcess Reaction12
  	ID	Reaction12
  	v1	1.45
  	Expression	( S0.MolarConc S1.MolarConc v1 ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Perc	-1
  		S1	Variable:/Drosophilia:Timc	-1
  		P0	Variable:/Drosophilia:PTc	1
  ExpressionFluxProcess Reaction13
  	ID	Reaction13
  	v2	1.45
  	Expression	( S0.MolarConc v2 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:Perc	1
  ExpressionFluxProcess Reaction14
  	ID	Reaction14
  	v2	1.45
  	Expression	( S0.MolarConc v2 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:Timc	1
  ExpressionFluxProcess Reaction15
  	ID	Reaction15
  	v2	1.45
  	Expression	( S0.MolarConc v2 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:PTc	1
  ExpressionFluxProcess Reaction16
  	ID	Reaction16
  	s4	0.48
  	Expression	( s4 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Timm	-1
  		P0	Variable:/Drosophilia:Timc	1
  ExpressionFluxProcess Reaction17
  	ID	Reaction17
  	v4	1.63
  	Expression	( S0.MolarConc v4 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCc	-1
  		P0	Variable:/Drosophilia:Clkc	1
  ExpressionFluxProcess Reaction18
  	ID	Reaction18
  	s6	0.47
  	Expression	( C0.MolarConc s6 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:Clkc	1
  		C0	Variable:/Drosophilia:Clkm	0
  ExpressionFluxProcess Reaction19
  	ID	Reaction19
  	s2	0.48
  	Expression	( s2 C0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:Perc	1
  		C0	Variable:/Drosophilia:Perm	0
  ExpressionFluxProcess Reaction20
  	ID	Reaction20
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Perc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction21
  	ID	Reaction21
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction22
  	ID	Reaction22
  	v2	1.45
  	Expression	( v2 P0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:EmptySet	0
  		P0	Variable:/Drosophilia:PTc	1
  ExpressionFluxProcess Reaction23
  	ID	Reaction23
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTn	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction24
  	ID	Reaction24
  	D0	0.012
  	Expression	( S0.MolarConc D0 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction25
  	ID	Reaction25
  	D0	0.012
  	Expression	( S0.MolarConc D0 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Clkc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction26
  	ID	Reaction26
  	D0	0.012
  	Expression	( S0.MolarConc D0 ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCn	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction27
  	ID	Reaction27
  	D0	0.012
  	Expression	( D0 S0.MolarConc ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Timc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction28
  	ID	Reaction28
  	D1	0.94
  	L1	0.3
  	Expression	( D1 S0.MolarConc / (L1 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Perm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction29
  	ID	Reaction29
  	D2	0.44
  	Dbtc	1.0
  	L2	0.2
  	Expression	( D2 Dbtc S0.MolarConc / (L2 + S0.MolarConc) ) * S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Perc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction30
  	ID	Reaction30
  	D3	0.94
  	L3	0.3
  	Expression	( D3 S0.MolarConc / (L3 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Timm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction31
  	ID	Reaction31
  	D4	0.44
  	L4	0.2
  	Expression	( D4 S0.MolarConc / (L4 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Timc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction32
  	ID	Reaction32
  	D5	0.44
  	L5	0.2
  	Expression	( D5 S0.MolarConc / (L5 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction33
  	ID	Reaction33
  	D6	0.29
  	L6	0.2
  	Expression	( D6 S0.MolarConc / (L6 + S0.MolarConc) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:PTn	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction34
  	ID	Reaction34
  	D7	0.54
  	L7	0.13
  	Expression	( S0.MolarConc D7 / (S0.MolarConc + L7) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Clkm	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction35
  	ID	Reaction35
  	D8	0.6
  	L8	0.2
  	Expression	( S0.MolarConc D8 / (S0.MolarConc + L8) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:Clkc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction36
  	ID	Reaction36
  	D9	0.6
  	L9	0.2
  	Expression	( S0.MolarConc D9 / (S0.MolarConc + L9) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCc	-1
  		P0	Variable:/Drosophilia:EmptySet	0
  ExpressionFluxProcess Reaction37
  	ID	Reaction37
  	D10	0.3
  	L10	0.2
  	Expression	( S0.MolarConc D10 / (S0.MolarConc + L10) ) S0.getSuperSystem().SizeN_A
  	VariableReferenceList
  		S0	Variable:/Drosophilia:CCn	-1
  		P0	Variable:/Drosophilia:EmptySet	0

  
  
  

  System:/Drosophilia

  System Information
  StepperID	DE
  Variable List
  ID	Name		Value
  Dimensions	-----		3
  SIZE	-----		1.0
  EmptySet	-----		0.0
  CCc	-----		1.80664101e+23
  CCn	-----		2.40885468e+23
  Clkc	-----		1.20442734e+23
  Clkm	-----		6.0221367e+22
  Perc	-----		3.61328202e+23
  Perm	-----		3.01106835e+23
  PTc	-----		5.41992303e+23
  PTn	-----		6.0221367e+23
  Timc	-----		4.81770936e+23
  Timm	-----		4.21549569e+23
  Process List
  Process Class/ID	Properties
  # No Property