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You are here: Home E-Cell Model Repository SBML Models Model Document CircClock-2002Vil

CircClock-2002Vil

File Name : CircClock-2002Vil.eml


  • Summary

    Stepper List (1)

    System List (2)

    Variable List (12)

    Process List (16)



  • Stepper


    Stepper Class/ID Properties
    ODE45Stepper
    DE
    # No Property-----


  • Detail Information

    System:/

    System Information
    StepperIDDE
    NameRoot System
    Variable List
    IDNameValue
    # No Property
    Process List
    Process Class/IDProperties
    ExpressionFluxProcess

    Reaction1
    IDReaction1
    gammaC2.0
    Expression( S0.MolarConc S1.MolarConc gammaC ) * S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:A-1
    S1 Variable:/deterministicOscillator:R-1
    P0 Variable:/deterministicOscillator:C1
    ExpressionFluxProcess

    Reaction2
    IDReaction2
    deltaA1.0
    Expression( S0.MolarConc deltaA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:A-1
    P0 Variable:/deterministicOscillator:EmptySet0
    ExpressionFluxProcess

    Reaction3
    IDReaction3
    deltaA1.0
    Expression( S0.MolarConc deltaA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:C-1
    P0 Variable:/deterministicOscillator:R1
    ExpressionFluxProcess

    Reaction4
    IDReaction4
    deltaR0.2
    Expression( S0.MolarConc deltaR ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:R-1
    P0 Variable:/deterministicOscillator:EmptySet0
    ExpressionFluxProcess

    Reaction5
    IDReaction5
    gammaA1.0
    Expression( S0.MolarConc S1.MolarConc gammaA ) * S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:A-1
    S1 Variable:/deterministicOscillator:DA-1
    P0 Variable:/deterministicOscillator:DAp1
    ExpressionFluxProcess

    Reaction6
    IDReaction6
    thetaA50.0
    Expression( S0.MolarConc thetaA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DAp-1
    P0 Variable:/deterministicOscillator:A1
    P1 Variable:/deterministicOscillator:DA1
    ExpressionFluxProcess

    Reaction7
    IDReaction7
    alphaA50.0
    Expression( S0.MolarConc alphaA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DA-1
    P0 Variable:/deterministicOscillator:DA1
    P1 Variable:/deterministicOscillator:MA1
    ExpressionFluxProcess

    Reaction8
    IDReaction8
    alphaAp500.0
    Expression( S0.MolarConc alphaAp ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DAp-1
    P0 Variable:/deterministicOscillator:DAp1
    P1 Variable:/deterministicOscillator:MA1
    ExpressionFluxProcess

    Reaction9
    IDReaction9
    deltaMA10.0
    Expression( S0.MolarConc deltaMA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:MA-1
    P0 Variable:/deterministicOscillator:EmptySet0
    ExpressionFluxProcess

    Reaction10
    IDReaction10
    betaA50.0
    Expression( S0.MolarConc betaA ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:MA-1
    P0 Variable:/deterministicOscillator:A1
    P1 Variable:/deterministicOscillator:MA1
    ExpressionFluxProcess

    Reaction11
    IDReaction11
    gammaR1.0
    Expression( S0.MolarConc S1.MolarConc gammaR ) * S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:A-1
    S1 Variable:/deterministicOscillator:DR-1
    P0 Variable:/deterministicOscillator:DRp1
    ExpressionFluxProcess

    Reaction12
    IDReaction12
    thetaR100.0
    Expression( S0.MolarConc thetaR ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DRp-1
    P0 Variable:/deterministicOscillator:A1
    P1 Variable:/deterministicOscillator:DR1
    ExpressionFluxProcess

    Reaction13
    IDReaction13
    alphaR0.01
    Expression( S0.MolarConc alphaR ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DR-1
    P0 Variable:/deterministicOscillator:DR1
    P1 Variable:/deterministicOscillator:MR1
    ExpressionFluxProcess

    Reaction14
    IDReaction14
    alphaRp50.0
    Expression( S0.MolarConc alphaRp ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:DRp-1
    P0 Variable:/deterministicOscillator:DRp1
    P1 Variable:/deterministicOscillator:MR1
    ExpressionFluxProcess

    Reaction15
    IDReaction15
    deltaMR0.5
    Expression( S0.MolarConc deltaMR ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:MR-1
    P0 Variable:/deterministicOscillator:EmptySet0
    ExpressionFluxProcess

    Reaction16
    IDReaction16
    betaR5.0
    Expression( S0.MolarConc betaR ) S0.getSuperSystem().SizeN_A
    VariableReferenceList
    S0 Variable:/deterministicOscillator:MR-1
    P0 Variable:/deterministicOscillator:MR1
    P1 Variable:/deterministicOscillator:R1


    System:/deterministicOscillator

    System Information
    StepperIDDE
    Variable List
    IDNameValue
    Dimensions-----3
    SIZE-----1.0
    EmptySet-----0.0
    A-----0.0
    C-----0.0
    DA-----6.0221367e+23
    DAp-----0.0
    DR-----6.0221367e+23
    DRp-----0.0
    MA-----0.0
    MR-----0.0
    R-----0.0
    Process List
    Process Class/IDProperties
    # No Property