Metabolism-2002Hoe
File Name : Metabolism-2002Hoe.eml
Summary
Stepper List (1)
System List (2)
Variable List (22)
- /compartment:ADP
- /compartment:ATP
- /compartment:Ac
- /compartment:AcCoA
- /compartment:AcLac
- /compartment:AcO
- /compartment:AcP
- /compartment:AcetoinIn
- /compartment:AcetoinOut
- /compartment:ActoinIn
- /compartment:Butanediol
- /compartment:CoA
- /compartment:Dimensions
- /compartment:EtOH
- /compartment:NAD
- /compartment:NADH
- /compartment:O2
- /compartment:Pi
- /compartment:SIZE
- /compartment:halfglucose
- /compartment:lactate
- /compartment:pyruvate
Process List (14)
Stepper
Stepper Class/ID Properties ODE45Stepper
DE# No Property ----- Detail Information
System:/
System Information StepperID DE Name Root System Variable List ID Name Value # No Property Process List Process Class/ID Properties ExpressionFluxProcess
R1ID R1 V_1 2397.0 Kglc_1 0.1 Knad_1 0.14 Kadp_1 0.047 Kpyr_1 25.0 Knadh_1 0.09 Katp_1 0.019 Expression ( V_1 (S2.MolarConc / Kglc_1) (S1.MolarConc / Knad_1) (S0.MolarConc / Kadp_1) / 1 + S2.MolarConc / Kglc_1 + P2.MolarConc / Kpyr_1) </em> (1 + S1.MolarConc / Knad_1 + P1.MolarConc / Knadh_1) <em> (1 + S0.MolarConc / Kadp_1 + P0.MolarConc / Katp_1[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:ADP -1 S1 Variable:/compartment:NAD -1 S2 Variable:/compartment:halfglucose 0 P0 Variable:/compartment:ATP 1 P1 Variable:/compartment:NADH 1 P2 Variable:/compartment:pyruvate 1 ExpressionFluxProcess
R2ID R2 V_2 5118.0 Keq_2 21120.7 Kpyr_2 1.5 Knadh_2 0.08 Klac_2 100.0 Knad_2 2.4 Expression ( V_2 S1.MolarConc </em> S0.MolarConc - P1.MolarConc <em> P0.MolarConc / Keq_2) / (Kpyr_2 </em> Knadh_2[+] / 1 + S1.MolarConc / Kpyr_2 + P1.MolarConc / Klac_2) <em> (1 + S0.MolarConc / Knadh_2 + P0.MolarConc / Knad_2[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NADH -1 S1 Variable:/compartment:pyruvate -1 P0 Variable:/compartment:NAD 1 P1 Variable:/compartment:lactate 0 ExpressionFluxProcess
R3ID R3 V_3 259.0 Kpyr_3 1.0 Knad_3 0.4 Kcoa_3 0.014 Ki_3 46.4 Knadh_3 0.1 Kaccoa_3 0.008 Expression ( V_3 (S1.MolarConc / Kpyr_3) (S0.MolarConc / Knad_3) (S2.MolarConc / Kcoa_3) (S0.MolarConc / (S0.MolarConc + Ki_3 P0.MolarConc)) / 1 + S1.MolarConc / Kpyr_3) </em> (1 + S0.MolarConc / Knad_3 + P0.MolarConc / Knadh_3) <em> (1 + S2.MolarConc / Kcoa_3 + P1.MolarConc / Kaccoa_3[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NAD -1 S1 Variable:/compartment:pyruvate -1 S2 Variable:/compartment:CoA -1 P0 Variable:/compartment:NADH 1 P1 Variable:/compartment:AcCoA 1 ExpressionFluxProcess
R4ID R4 V_4 42.0 Keq_4 0.0281 Kiaccoa_4 0.2 Kpi_4 2.6 Kipi_4 2.6 Kiacp_4 0.2 Kicoa_4 0.029 Kacp_4 0.7 Expression ( V_4 S0.MolarConc </em> S1.MolarConc - P1.MolarConc <em> P0.MolarConc / Keq_4) / (Kiaccoa_4 </em> Kpi_4[+] / (1 + S0.MolarConc / Kiaccoa_4 + S1.MolarConc / Kipi_4 + P1.MolarConc / Kiacp_4 + P0.MolarConc / Kicoa_4 + S0.MolarConc S1.MolarConc / (Kiaccoa_4 Kpi_4) + P1.MolarConc P0.MolarConc / (Kacp_4 Kicoa_4)) ) * S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:AcCoA -1 S1 Variable:/compartment:Pi 0 P0 Variable:/compartment:CoA 1 P1 Variable:/compartment:AcP 1 ExpressionFluxProcess
R5ID R5 V_5 2700.0 Keq_5 174.2 Kadp_5 0.5 Kacp_5 0.16 Kac_5 7.0 Katp_5 0.07 Expression ( V_5 S1.MolarConc </em> S0.MolarConc - P1.MolarConc <em> P0.MolarConc / Keq_5) / (Kadp_5 </em> Kacp_5[+] / 1 + S1.MolarConc / Kacp_5 + P1.MolarConc / Kac_5) <em> (1 + S0.MolarConc / Kadp_5 + P0.MolarConc / Katp_5[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:ADP -1 S1 Variable:/compartment:AcP -1 P0 Variable:/compartment:ATP 1 P1 Variable:/compartment:Ac 0 ExpressionFluxProcess
R6ID R6 V_6 97.0 Keq_6 1.0 Kaccoa_6 0.007 Knadh_6 0.025 Knad_6 0.08 Kcoa_6 0.008 Kaco_6 10.0 Expression ( V_6 S1.MolarConc </em> S0.MolarConc - P1.MolarConc <em> P0.MolarConc </em> P2.MolarConc / Keq_6) / (Kaccoa_6 <em> Knadh_6[+] / 1 + P0.MolarConc / Knad_6 + S0.MolarConc / Knadh_6) </em> (1 + S1.MolarConc / Kaccoa_6 + P1.MolarConc / Kcoa_6 + P2.MolarConc / Kaco_6 + P2.MolarConc <em> P1.MolarConc / (Kaco_6 </em> Kcoa_6[+] ) ) * S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NADH -1 S1 Variable:/compartment:AcCoA -1 P0 Variable:/compartment:NAD 1 P1 Variable:/compartment:CoA 1 P2 Variable:/compartment:AcO 1 ExpressionFluxProcess
R7ID R7 V_7 162.0 Keq_7 12354.9 Kaco_7 0.03 Knadh_7 0.05 Knad_7 0.08 Ketoh_7 1.0 Expression ( V_7 S1.MolarConc </em> S0.MolarConc - P1.MolarConc <em> P0.MolarConc / Keq_7) / (Kaco_7 </em> Knadh_7[+] / 1 + P0.MolarConc / Knad_7 + S0.MolarConc / Knadh_7) <em> (1 + S1.MolarConc / Kaco_7 + P1.MolarConc / Ketoh_7[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NADH -1 S1 Variable:/compartment:AcO -1 P0 Variable:/compartment:NAD 1 P1 Variable:/compartment:EtOH 0 ExpressionFluxProcess
R8ID R8 V_8 600.0 Kpyr_8 50.0 Keq_8 9e+12 Kaclac_8 100.0 n_8 2.4 Expression ( V_8 S0.MolarConc / Kpyr_8 (1 - P0.MolarConc / (S0.MolarConc Keq_8)) (S0.MolarConc / Kpyr_8 + P0.MolarConc / Kaclac_8)^(n_8 - 1) / (1 + (S0.MolarConc / Kpyr_8 + P0.MolarConc / Kaclac_8)^n_8) ) * S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:pyruvate -1 P0 Variable:/compartment:AcLac 2 ExpressionFluxProcess
R9ID R9 V_9 106.0 Kaclac_9 10.0 Kacet_9 100.0 Expression ( V_9 (S0.MolarConc / Kaclac_9) / (1 + S0.MolarConc / Kaclac_9 + P0.MolarConc / Kacet_9) ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:AcLac -1 P0 Variable:/compartment:AcetoinIn 1 ExpressionFluxProcess
R10ID R10 V_10 200.0 Kacet_10 5.0 Expression ( V_10 (S0.MolarConc / Kacet_10) / (1 + S0.MolarConc / Kacet_10) ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:AcetoinIn -1 P0 Variable:/compartment:AcetoinOut 1 ExpressionFluxProcess
R11ID R11 V_11 105.0 Keq_11 1400.0 Kacet_11 0.06 Knadh_11 0.02 Kbut_11 2.6 Knad_11 0.16 Expression ( V_11 S1.MolarConc </em> S0.MolarConc - P1.MolarConc <em> P0.MolarConc / Keq_11) / (Kacet_11 </em> Knadh_11[+] / 1 + S1.MolarConc / Kacet_11 + P1.MolarConc / Kbut_11) <em> (1 + S0.MolarConc / Knadh_11 + P0.MolarConc / Knad_11[+] ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NADH -1 S1 Variable:/compartment:AcetoinIn -1 P0 Variable:/compartment:NAD 1 P1 Variable:/compartment:Butanediol 0 ExpressionFluxProcess
R12ID R12 V_12 900.0 Katp_12 6.2 n_12 2.6 Expression ( V_12 (S0.MolarConc / (P0.MolarConc Katp_12))^n_12 / (1 + (S0.MolarConc / (P0.MolarConc Katp_12))^n_12) ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:ATP -1 P0 Variable:/compartment:ADP 1 ExpressionFluxProcess
R13ID R13 V_13 118.0 Knadh_13 0.041 Ko_13 0.01 Knad_13 1.0 Expression ( V_13 (S0.MolarConc S1.MolarConc / (Knadh_13 Ko_13)) / 1 + S0.MolarConc / Knadh_13 + P0.MolarConc / Knad_13) </em> (1 + S1.MolarConc / Ko_13[+] ) * S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:NADH -1 S1 Variable:/compartment:O2 0 P0 Variable:/compartment:NAD 1 ExpressionFluxProcess
R14ID R14 k_14 0.0003 Expression ( k_14 S0.MolarConc ) S0.getSuperSystem().SizeN_A VariableReferenceList S0 Variable:/compartment:AcLac -1 P0 Variable:/compartment:ActoinIn 1 System:/compartment
System Information StepperID DE Variable List ID Name Value Dimensions ----- 3 SIZE ----- 1.0 ADP ----- 3.01106835e+24 NAD ----- 6.0221367e+24 ATP ----- 0.0 NADH ----- 0.0 pyruvate ----- 602213670000.0 lactate ----- 6.0221367e+23 CoA ----- 6.0221367e+23 halfglucose ----- 1.80664101e+25 AcCoA ----- 0.0 Pi ----- 6.0221367e+24 AcP ----- 0.0 Ac ----- 6.0221367e+23 AcO ----- 0.0 EtOH ----- 6.0221367e+23 AcLac ----- 0.0 AcetoinIn ----- 0.0 AcetoinOut ----- 0.0 Butanediol ----- 6.0221367e+21 O2 ----- 1.20442734e+23 ActoinIn ----- 0.0 Process List Process Class/ID Properties # No Property

